The PDF reports from the Variance Table are a great way to share your information, keep in your lab notebook or use in presentations. You can even use Assemble by Name with Clustal when you have multiple samples from different sources. Align sequences directly from Sequencher’s project desktop using Clustal.Use it in conjunction with the Variance Table and easily determine whether you are looking at known or unreported SNPs. Sequencher’s Reference Sequence is a powerful feature controlling numbering, features and much more.Use confidence values to assist in trimming data, quality checks, and SNP detection to improve the quality of your results.Editing your data has never been simpler with tools to help you locate and deal with ambiguities, check for heterozygotes and move around your data.And if you are working with multiple samples from different sources then automate the assembly using Assemble by Name. With intuitive controls you can select the best algorithm for your data including Assemble to Reference.You can even maintain a library of trim criteria to make life even easier.
Trim your sequences for poor quality data with ease.Sequencher makes traditional sequence assembly easy while keeping you in control.As long as your aligner creates SAM or BAM as its output you are ready to explore your data with one of the most widely regarded RNA-Seq tools available. Because we know you have your own favourite aligners we don’t insist you use ours. We also added the charts you would expect to see, such as the Volcano plot, so you can view the results without resorting to the command line.With the addition of the Cufflinks suite you can perform RNA-Seq Differential Expression using the same style of interface we developed for all our NGS algorithms.Align reads to a reference and capture the unaligned reads for further rounds of reference-based alignment or de novo assembly. If you are sequencing mixed populations, then combine the power of reference-guided-alignment with de novo assembly. BWA, Velvet, Maq, GSNAP and Tablet are only the start for Sequencher.Perform SNP analysis, Methylation analysis, or RNA tolerant alignment in just a few steps.The Sequencher interface helps you select options, set values, and learn the available functionality with descriptions and tool tips.
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